Stem-loop ssa-mir-27c-1

Accession

MI0026661

Description

Salmo salar ssa-mir-27c-1 precursor miRNA

Gene family

MIPF0000036; mir-27

Sequence

AGAGCUUAGCUAAUUGGUGAGcauugaucccucuuauguguugUUCACAGUGGCUAAGUUCAGU
.(((((((((((....(((((((..................)))))))..)))))))))))...

Structure

--A           AUUG       uugauccc 
   GAGCUUAGCUA    GUGAGca        u
   |||||||||||    |||||||         
   CUUGAAUCGGU    CACUUgu        c
UGA           --GA       uguguauu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-27c-5p

• Accession: MIMAT0032578
• Description: Salmo salar ssa-miR-27c-5p mature miRNA
• Sequence: 1 - AGAGCUUAGCUAAUUGGUGAG - 21
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-27c-3p

• Accession: MIMAT0032579
• Description: Salmo salar ssa-miR-27c-3p mature miRNA
• Sequence: 44 - UUCACAGUGGCUAAGUUCAGU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482