miRBase entry: ssa-mir-30a-4

Stem-loop ssa-mir-30a-4


Accession
MI0026675
Description
Salmo salar ssa-mir-30a-4 precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
3 open access papers mention ssa-mir-30a-4
(3 sentences)

Sequence

UGUAAACAUCCUACACUCUCAGCugugacaucaucgagCUGGGAGAGGGGUGUUUACGCU
.(((((((((((...(((((((((.(((.....)))))))))))).)))))))))))...

Structure
--U           ACA         g   c 
   GUAAACAUCCU   CUCUCAGCu uga a
   |||||||||||   ||||||||| ||| u
   CAUUUGUGGGG   GAGGGUCga gcu c
UCG           --A         -   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-30a-5p

Accession MIMAT0032600
Description Salmo salar ssa-miR-30a-5p mature miRNA
Sequence 1 - UGUAAACAUCCUACACUCUCAGC - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-30a-4-3p

Accession MIMAT0032602
Description Salmo salar ssa-miR-30a-4-3p mature miRNA
Sequence 39 - CUGGGAGAGGGGUGUUUACGCU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482