miRBase entry: ssa-mir-30b

Stem-loop ssa-mir-30b


Accession
MI0026678
Description
Salmo salar ssa-mir-30b precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
3 open access papers mention ssa-mir-30b
(3 sentences)

Sequence

UGUAAACAUCCCCGACUGGAAGCUgugauguacauguucuagCUUUCAGUAGGGUGUUUGCUGC
.((((((((((...(((((((((((.(((......))).))))))))))).))))))))))...

Structure
--U          CCG           u   gu 
   GUAAACAUCC   ACUGGAAGCUg gau  a
   ||||||||||   ||||||||||| |||   
   CGUUUGUGGG   UGACUUUCgau uug  c
CGU          --A           c   ua 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-30b-5p

Accession MIMAT0032604
Description Salmo salar ssa-miR-30b-5p mature miRNA
Sequence 1 - UGUAAACAUCCCCGACUGGAAGCU - 24
Evidence experimental
Illumina [1]

Mature ssa-miR-30b-3p

Accession MIMAT0032605
Description Salmo salar ssa-miR-30b-3p mature miRNA
Sequence 43 - CUUUCAGUAGGGUGUUUGCUGC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482