Stem-loop ssa-mir-30d-1

Accession

MI0026681

Description

Salmo salar ssa-mir-30d-1 precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

3 open access papers mention ssa-mir-30d-1
(4 sentences)

Sequence

UGUAAACAUCCUUGACUGAAAGCUgguguuucauacagggCUUUCAGUCGGAUGUUUGCAGC
(((((((((((..(((((((((((..(((.....))).))))))))))))))))))))))..

Structure

--           UU           gg   u 
  UGUAAACAUCC  GACUGAAAGCU  ugu u
  |||||||||||  |||||||||||  ||| c
  ACGUUUGUAGG  CUGACUUUCgg  aca a
CG           --           -g   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-30d-5p

• Accession: MIMAT0032608
• Description: Salmo salar ssa-miR-30d-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUUGACUGAAAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-30d-3p

• Accession: MIMAT0032609
• Description: Salmo salar ssa-miR-30d-3p mature miRNA
• Sequence: 41 - CUUUCAGUCGGAUGUUUGCAGC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482