Stem-loop ssa-mir-30e-3

Accession

MI0026685

Description

Salmo salar ssa-mir-30e-3 precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

3 open access papers mention ssa-mir-30e-3
(3 sentences)

Sequence

UGUAAACAUCCUACACUCAGCUauagccuguauggaaggCUGGGGAGAGGGUGUUUACUUU
.(((((((((((...(((((((....((.....))..)))))))...)))))))))))...

Structure

--U           ACA       auag  u 
   GUAAACAUCCU   CUCAGCU    cc g
   |||||||||||   |||||||    || u
   CAUUUGUGGGA   GGGUCgg    gg a
UUU           GAG       --aa  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-30e-5p

• Accession: MIMAT0032611
• Description: Salmo salar ssa-miR-30e-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCAGCU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-30e-3-3p

• Accession: MIMAT0032613
• Description: Salmo salar ssa-miR-30e-3-3p mature miRNA
• Sequence: 40 - CUGGGGAGAGGGUGUUUACUUU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482