miRBase entry: ssa-mir-93a-1

Stem-loop ssa-mir-93a-1


Accession
MI0026763
Description
Salmo salar ssa-mir-93a-1 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
1 open access papers mention ssa-mir-93a-1
(9 sentences)

Sequence

AAAAGUGCUGUUUGUGCAGGUAGauaaacucaucagaccuACUGCAAAACCAGCACUUCCUG
..((((((((.((.(((((.(((...............)))))))).)).))))))))....

Structure
--AA        U  G     G   auaaac 
    AAGUGCUG UU UGCAG UAG      u
    |||||||| || ||||| |||      c
    UUCACGAC AA ACGUC Auc      a
GUCC        C  A     -   cagacu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-93a-5p

Accession MIMAT0032713
Description Salmo salar ssa-miR-93a-5p mature miRNA
Sequence 1 - AAAAGUGCUGUUUGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-93a-3p

Accession MIMAT0032714
Description Salmo salar ssa-miR-93a-3p mature miRNA
Sequence 41 - ACUGCAAAACCAGCACUUCCUG - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482