miRBase entry: ssa-mir-99-1

Stem-loop ssa-mir-99-1


Accession
MI0026767
Description
Salmo salar ssa-mir-99-1 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
2 open access papers mention ssa-mir-99-1
(4 sentences)

Sequence

AACCCGUAGAUCCGAUCUUGUGgcaaaucugacaucaCAAGCUCCUCUCUGUGGGUCU
.(((((((((...((.(((((((...........))))))).))...)))))))))..

Structure
-A         UCC  U       caaa 
  ACCCGUAGA   GA CUUGUGg    u
  |||||||||   || |||||||    c
  UGGGUGUCU   CU GAACacu    u
UC         CUC  C       acag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-99-5p

Accession MIMAT0032718
Description Salmo salar ssa-miR-99-5p mature miRNA
Sequence 1 - AACCCGUAGAUCCGAUCUUGUG - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-99-3p

Accession MIMAT0032719
Description Salmo salar ssa-miR-99-3p mature miRNA
Sequence 38 - CAAGCUCCUCUCUGUGGGUCU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482