miRBase entry: ssa-mir-99-2

Stem-loop ssa-mir-99-2


Accession
MI0026768
Description
Salmo salar ssa-mir-99-2 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
2 open access papers mention ssa-mir-99-2
(4 sentences)

Sequence

AACCCGUAGAUCCGAUCUUGUGgcgaaucugacaucaCAAGCUCGCCUCUGUGGGCCUCU
..((((((((..(((.(((((((.(.......).))))))).)))..)))))))).....

Structure
---AA        UC   U       c aa 
     CCCGUAGA  CGA CUUGUGg g  u
     ||||||||  ||| ||||||| |  c
     GGGUGUCU  GCU GAACacu c  u
UCUCC        CC   C       a ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-99-5p

Accession MIMAT0032718
Description Salmo salar ssa-miR-99-5p mature miRNA
Sequence 1 - AACCCGUAGAUCCGAUCUUGUG - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-99-2-3p

Accession MIMAT0032720
Description Salmo salar ssa-miR-99-2-3p mature miRNA
Sequence 38 - CAAGCUCGCCUCUGUGGGCCUCU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482