Stem-loop sequence cel-mir-8188

Accession

MI0026819 (change log)

Description

Caenorhabditis elegans miR-8188 stem-loop

Stem-loop

   -------ag     a   ag  ac u    ag 
5'          gcaag ugu  gc  g aggc  u
            ||||| |||  ||  | ||||   
3'          cguuc aca  ug  c uccg  c
   cguauaaag     -   ga  -a c    ga 

Deep sequencing

310703 reads, 912 reads per million, 17 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrII: 11840444-11840500 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cel-mir-8188

• cel-mir-8188: chrII: 11840444-11840500 [-]
• cel-mir-355: chrII: 11833536-11833645 [-]

Database links

• miRBase Tracker:MI0026819

Mature sequence cel-miR-8188-5p

• Accession: MIMAT0032789
• Sequence: 1 - aggcaagauguaggcacgu - 19
• Deep sequencing: 310681 reads, 17 experiments
• Evidence: experimental; SOLiD [1]

Mature sequence cel-miR-8188-3p

• Accession: MIMAT0032790
• Sequence: 35 - caguagacacuugcgaaauaugc - 57
• Evidence: experimental; SOLiD [1]

References

1. PMID:23729632 "Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes" Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C Genome Biol Evol. 5:1246-1260(2013).