miRBase entry: cel-mir-8196a

Stem-loop cel-mir-8196a


Accession
MI0026827
Description
Caenorhabditis elegans cel-mir-8196a precursor miRNA
Gene family
MIPF0002057; mir-8196


Sequence

1844 reads, 60 reads per million, 16 experiments
CCCCAUAGAAAUAUUUUCUAUGUCaaccucuugcacgguugccGUAGUUAAUUUUUCUUUGGGAAU
.((((.(((((.(((..(((((.(((((........))))).)))))..))).))))).))))...

Structure
--C    U     U   UU     U     ucu 
   CCCA AGAAA AUU  CUAUG Caacc   u
   |||| ||||| |||  ||||| |||||    
   GGGU UCUUU UAA  GAUGc guugg   g
UAA    U     U   UU     c     cac 


Annotation confidence Not enough data
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Genome context
chrX: 2329038-2329103 [+]

Database links

Mature cel-miR-8196a-5p

Accession MIMAT0032805
Description Caenorhabditis elegans cel-miR-8196a-5p mature miRNA
Sequence 1 - CCCCAUAGAAAUAUUUUCUAUGUC - 24
Evidence experimental
Illumina [1]

Mature cel-miR-8196a-3p

Accession MIMAT0032806
Description Caenorhabditis elegans cel-miR-8196a-3p mature miRNA
Sequence 44 - GUAGUUAAUUUUUCUUUGGGAAU - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260