miRBase entry: ppc-mir-2235b

Stem-loop ppc-mir-2235b


Accession
MI0026852
Description
Pristionchus pacificus ppc-mir-2235b precursor miRNA


Sequence

CCAUCCAAUUCUGUCCGGUCUGAACcauaguggauuguguUCACCGGGAGCAUUGUUUGAUC
.((..((((.((.((((((..((((((........)).)))))))))))).))))..))...

Structure
--C  UC    U  G      CU    -  uag 
   CA  CAAU CU UCCGGU  GAAC ca   u
   ||  |||| || ||||||  |||| ||    
   GU  GUUA GA GGGCCA  CUug gu   g
CUA  UU    C  -      --    u  uag 


Annotation confidence Not enough data
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Genome context
ABKE03000123.1: 3623734-3623795 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ppc-mir-2235b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-2235b-5p

Accession MIMAT0032850
Description Pristionchus pacificus ppc-miR-2235b-5p mature miRNA
Sequence 1 - CCAUCCAAUUCUGUCCGGUCUGAAC - 25
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-2235b-3p

Accession MIMAT0032851
Description Pristionchus pacificus ppc-miR-2235b-3p mature miRNA
Sequence 41 - UCACCGGGAGCAUUGUUUGAUC - 62
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260