miRBase entry: ppc-mir-8217

Stem-loop ppc-mir-8217


Accession
MI0026859
Description
Pristionchus pacificus ppc-mir-8217 precursor miRNA


Sequence

ACGUCAGUUCUGCCACUUUUUACCaaggacugaguuggUAAGUGUGGUGCUCUGAUGUCG
(((((((..(.(((((..((((((((........)))))))).))))))..)))))))..

Structure
--       UU U     UU        gga 
  ACGUCAG  C GCCAC  UUUACCaa   c
  |||||||  | |||||  ||||||||    
  UGUAGUC  G UGGUG  GAAUgguu   u
GC       UC -     -U        gag 


Annotation confidence Not enough data
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Genome context
ABKE03000123.1: 893729-893788 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppc-mir-8217
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8217-5p

Accession MIMAT0032864
Description Pristionchus pacificus ppc-miR-8217-5p mature miRNA
Sequence 1 - ACGUCAGUUCUGCCACUUUUUACC - 24
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8217-3p

Accession MIMAT0032865
Description Pristionchus pacificus ppc-miR-8217-3p mature miRNA
Sequence 39 - UAAGUGUGGUGCUCUGAUGUCG - 60
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260