miRBase entry: ppc-mir-8232

Stem-loop ppc-mir-8232


Accession
MI0026883
Description
Pristionchus pacificus ppc-mir-8232 precursor miRNA


Sequence

UGUCAUUCUGUCCCGAGCGACCugugccaccgcacagcuuggUCACCGGGAGCAGAGUGGCUAC
.((((((((((((((.(.(((((((((....)))))....)))).)))))).)))))))))...

Structure
--U         -     A C    ----     c 
   GUCAUUCUG UCCCG G GACC    ugugc a
   ||||||||| ||||| | ||||    |||||  
   CGGUGAGAC AGGGC C CUgg    acacg c
CAU         G     - A    uucg     c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ppc-miR-8232-5p

Accession MIMAT0032912
Description Pristionchus pacificus ppc-miR-8232-5p mature miRNA
Sequence 1 - UGUCAUUCUGUCCCGAGCGACC - 22
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8232-3p

Accession MIMAT0032913
Description Pristionchus pacificus ppc-miR-8232-3p mature miRNA
Sequence 43 - UCACCGGGAGCAGAGUGGCUAC - 64
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260