miRBase entry: ppc-mir-63j

Stem-loop ppc-mir-63j


Accession
MI0026885
Description
Pristionchus pacificus ppc-mir-63j precursor miRNA


Sequence

CCGCCCGCUUGCAGUUGUCAUGGUccucuuguugagagcaggccacUAUGACACUCAAGCGAGUGAAG
.(((.((((((.(((.((((((((((((((.....))).)))..))))))))))))))))).)))...

Structure
--C   C      C   U        --   -   g 
   CGC CGCUUG AGU GUCAUGGU  ccu cuu u
   ||| |||||| ||| ||||||||  ||| ||| u
   GUG GCGAAC UCA CAGUAUca  gga gag g
GAA   A      -   -        cc   c   a 


Annotation confidence Not enough data
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Genome context
ABKE03000076.1: 1442729-1442796 [+]

Database links

Mature ppc-miR-63j-5p

Accession MIMAT0032916
Description Pristionchus pacificus ppc-miR-63j-5p mature miRNA
Sequence 1 - CCGCCCGCUUGCAGUUGUCAUGGU - 24
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-63j-3p

Accession MIMAT0032917
Description Pristionchus pacificus ppc-miR-63j-3p mature miRNA
Sequence 47 - UAUGACACUCAAGCGAGUGAAG - 68
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260