Stem-loop ppc-mir-2238i

Accession

MI0026897

Description

Pristionchus pacificus ppc-mir-2238i precursor miRNA

Gene family

MIPF0000822; mir-2238

Sequence

CCGUUCACUCAUCUCGUCAAUCGaugauugaauuucgAGUGACAGAUCAUCAGUGCGCGAGA
.(((.((((.((((.((((.((((..........)))).))))))))....)))).)))...

Structure

--C   U    ---C    C    A    ugau 
   CGU CACU    AUCU GUCA UCGa    u
   ||| ||||    |||| |||| ||||     
   GCG GUGA    UAGA CAGU Agcu    g
AGA   C    CUAC    -    G    uuaa 

Annotation confidence Not enough data

Genome context

ABKE03000048.1: 447717-447778 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-2238i

Mature ppc-miR-2238i-5p

• Accession: MIMAT0032940
• Description: Pristionchus pacificus ppc-miR-2238i-5p mature miRNA
• Sequence: 1 - CCGUUCACUCAUCUCGUCAAUCG - 23
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature ppc-miR-2238i-3p

• Accession: MIMAT0032941
• Description: Pristionchus pacificus ppc-miR-2238i-3p mature miRNA
• Sequence: 38 - AGUGACAGAUCAUCAGUGCGCGAGA - 62
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260