miRBase entry: ppc-mir-8245a

Stem-loop ppc-mir-8245a

Accession

MI0026904

Description

Pristionchus pacificus ppc-mir-8245a precursor miRNA

Sequence

CGAUAGCUGUCGGUAAUGUAGUuggcauugaaggaacUACAUGUACCGUCAGUCGUCAGA
.(((.((((.(((((((((((((...........)))))))).))))).)))).)))...

Structure

--C   A    U     -        ggca 
   GAU GCUG CGGUA AUGUAGUu    u
   ||| |||| ||||| ||||||||    u
   CUG UGAC GCCAU UACAUcaa    g
AGA   C    U     G        ggaa

Annotation confidence Not enough data

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Genome context

ABKE03000092.1: 2478441-2478500 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8245a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8245a-5p

Accession	MIMAT0032954
Description	Pristionchus pacificus ppc-miR-8245a-5p mature miRNA
Sequence	1 - CGAUAGCUGUCGGUAAUGUAGU - 22
Evidence	experimental Illumina [1], SOLiD [1]

Mature ppc-miR-8245a-3p

Accession	MIMAT0032955
Description	Pristionchus pacificus ppc-miR-8245a-3p mature miRNA
Sequence	38 - UACAUGUACCGUCAGUCGUCAGA - 60
Evidence	experimental Illumina [1], SOLiD [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260