miRBase entry: ppc-mir-8246

Stem-loop ppc-mir-8246


Accession
MI0026905
Description
Pristionchus pacificus ppc-mir-8246 precursor miRNA


Sequence

CAUUGACUUCUCGUGACCAUUCAuuugaucgaauuaugAAUGGUGCGAUCUAGUCGAAGCG
..((((((..((((.(((((((((...........)))))))))))))...))))))....

Structure
--CA      -UC    G         uuga 
    UUGACU   UCGU ACCAUUCAu    u
    ||||||   |||| |||||||||    c
    AGCUGA   AGCG UGGUAAgua    g
GCGA      UCU    -         uuaa 


Annotation confidence Not enough data
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Genome context
ABKE03000123.1: 8706260-8706320 [+]

Database links

Mature ppc-miR-8246-5p

Accession MIMAT0032956
Description Pristionchus pacificus ppc-miR-8246-5p mature miRNA
Sequence 1 - CAUUGACUUCUCGUGACCAUUCA - 23
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8246-3p

Accession MIMAT0032957
Description Pristionchus pacificus ppc-miR-8246-3p mature miRNA
Sequence 39 - AAUGGUGCGAUCUAGUCGAAGCG - 61
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260