miRBase entry: ppc-mir-8254

Stem-loop ppc-mir-8254


Accession
MI0026915
Description
Pristionchus pacificus ppc-mir-8254 precursor miRNA


Sequence

UCACGUGUUGCACCUUCCCAUCcggcauacgguaucggcgaUGGCAGUUGUACCACGUGGGA
(((((((.((((((.(((((((((.....))).)).)).)).))....)))).)))))))..

Structure
--       U    ----  U  -  -  -   g 
  UCACGUG UGCA    CC UC CC AU Ccg c
  ||||||| ||||    || || || || ||| a
  GGUGCAC AUGU    GG ag gg ua ggc u
AG       C    UGAC  U  c  c  u   a 


Annotation confidence Not enough data
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Genome context
ABKE03000076.1: 2723250-2723311 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ppc-mir-8254
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8254-5p

Accession MIMAT0032976
Description Pristionchus pacificus ppc-miR-8254-5p mature miRNA
Sequence 1 - UCACGUGUUGCACCUUCCCAUC - 22
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8254-3p

Accession MIMAT0032977
Description Pristionchus pacificus ppc-miR-8254-3p mature miRNA
Sequence 42 - UGGCAGUUGUACCACGUGGGA - 62
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260