miRBase entry: ppc-mir-8256

Stem-loop ppc-mir-8256


Accession
MI0026917
Description
Pristionchus pacificus ppc-mir-8256 precursor miRNA


Sequence

UCAGUGACCAAGGGCGAGUGCAGCauuauugauaggcUGCUUUCCUUUCGGUGGCUGGGG
(((((.(((.((((.(((.(((((...........))))).))))))).))).)))))..

Structure
--     G   A    C   U     auua 
  UCAGU ACC AGGG GAG GCAGC    u
  ||||| ||| |||| ||| |||||    u
  GGUCG UGG UUUC CUU CGUcg    g
GG     G   C    -   U     gaua 


Annotation confidence Not enough data
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Genome context
ABKE03000012.1: 1896455-1896514 [-]

Database links

Mature ppc-miR-8256-5p

Accession MIMAT0032980
Description Pristionchus pacificus ppc-miR-8256-5p mature miRNA
Sequence 1 - UCAGUGACCAAGGGCGAGUGCAGC - 24
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-8256-3p

Accession MIMAT0032981
Description Pristionchus pacificus ppc-miR-8256-3p mature miRNA
Sequence 38 - UGCUUUCCUUUCGGUGGCUGGGG - 60
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260