miRBase entry: ppc-mir-57

Stem-loop ppc-mir-57


Accession
MI0026927
Description
Pristionchus pacificus ppc-mir-57 precursor miRNA


Sequence

UACCCUGUAGUUCCGAGCCGUGUAucgcgcaaaugauggcucauaCACACUCGGUUACCGGGUGCU
(((((.((((..(((((..((((((.(.((........)).))))))).))))))))).)))))..

Structure
--     U    UU     CC      c c  aaa 
  UACCC GUAG  CCGAG  GUGUAu g gc   u
  ||||| ||||  |||||  |||||| | ||    
  GUGGG CAUU  GGCUC  CACaua c cg   g
UC     C    --     -A      - u  gua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ABKE03000123.1: 4892676-4892741 [-]

Database links

Mature ppc-miR-57-5p

Accession MIMAT0032999
Description Pristionchus pacificus ppc-miR-57-5p mature miRNA
Sequence 1 - UACCCUGUAGUUCCGAGCCGUGUA - 24
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-57-3p

Accession MIMAT0033000
Description Pristionchus pacificus ppc-miR-57-3p mature miRNA
Sequence 46 - CACACUCGGUUACCGGGUGCU - 66
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260