miRBase entry: ppc-mir-2253c

Stem-loop ppc-mir-2253c


Accession
MI0026928
Description
Pristionchus pacificus ppc-mir-2253c precursor miRNA
Gene family
MIPF0000915; mir-2253


Sequence

CGGAGUUCCAACAGGCCAUACAacuuugcguuugCAUGGCACUGCUGAAACUCCGAA
(((((((.((.((((((((.(((........))).))))).))).)).)))))))..

Structure
--       C  A   -     A   cuu 
  CGGAGUU CA CAG GCCAU CAa   u
  ||||||| || ||| ||||| |||    
  GCCUCAA GU GUC CGGUA guu   g
AA       A  C   A     C   ugc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ABKE03000028.1: 2892137-2892193 [+]

Database links

Mature ppc-miR-2253c-5p

Accession MIMAT0033001
Description Pristionchus pacificus ppc-miR-2253c-5p mature miRNA
Sequence 1 - CGGAGUUCCAACAGGCCAUACA - 22
Evidence experimental
Illumina [1], SOLiD [1]

Mature ppc-miR-2253c-3p

Accession MIMAT0033002
Description Pristionchus pacificus ppc-miR-2253c-3p mature miRNA
Sequence 35 - CAUGGCACUGCUGAAACUCCGAA - 57
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260