Stem-loop ppc-mir-2235a-10

Accession

MI0026930

Description

Pristionchus pacificus ppc-mir-2235a-10 precursor miRNA

Gene family

MIPF0000825; mir-2235

Sequence

UCAUUCAAUAUUGCCGGUUUGAACgaaauugaacaguUCACCGGAAGCAUUGUAUGAUC
((((.((((....(((((..((((...........)))))))))....)))).))))..

Structure

--    U    AUUG     UU    gaaa 
  UCAU CAAU    CCGGU  GAAC    u
  |||| ||||    |||||  ||||    u
  AGUA GUUA    GGCCA  CUug    g
CU    U    CGAA     --    acaa 

Annotation confidence Not enough data

Genome context

ABKE03000123.1: 4482725-4482783 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from ppc-mir-2235a-10

Mature ppc-miR-2235a-5p

• Accession: MIMAT0032107
• Description: Pristionchus pacificus ppc-miR-2235a-5p mature miRNA
• Sequence: 1 - UCAUUCAAUAUUGCCGGUUUGAAC - 24
• Evidence: experimental ; SOLiD [1]

Mature ppc-miR-2235a-10-3p

• Accession: MIMAT0033005
• Description: Pristionchus pacificus ppc-miR-2235a-10-3p mature miRNA
• Sequence: 38 - UCACCGGAAGCAUUGUAUGAUC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260