miRBase entry: ppc-mir-8269

Stem-loop ppc-mir-8269


Accession
MI0026940
Description
Pristionchus pacificus ppc-mir-8269 precursor miRNA


Sequence

GUGAGCAAGCAGGCGAAACAUGAaugaagcguugcuuugcucUUGAUUCAUCUGCGCGCUCAGGA
.(((((..(((((.(((.((.((.((((((...)))))).)).)).))).)))))..)))))...

Structure
--G     AA     C   A  U  a      g 
   UGAGC  GCAGG GAA CA GA ugaagc  
   |||||  ||||| ||| || || |||||| u
   ACUCG  CGUCU CUU GU cu guuucg  
AGG     CG     A   A  U  c      u 


Annotation confidence Not enough data
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Genome context
ABKE03000007.1: 194661-194725 [-]

Database links

Mature ppc-miR-8269-5p

Accession MIMAT0033024
Description Pristionchus pacificus ppc-miR-8269-5p mature miRNA
Sequence 1 - GUGAGCAAGCAGGCGAAACAUGA - 23
Evidence experimental
Illumina [1]

Mature ppc-miR-8269-3p

Accession MIMAT0033025
Description Pristionchus pacificus ppc-miR-8269-3p mature miRNA
Sequence 43 - UUGAUUCAUCUGCGCGCUCAGGA - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260