Stem-loop ppc-mir-8270

Accession

MI0026944

Description

Pristionchus pacificus ppc-mir-8270 precursor miRNA

Sequence

GUUGGUACGGCGCUGUUAAUCuauuuugaUAAACUACGCCCUACUGACAGC
(((((((.((((..(((.(((......))).)))..)))).)))))))...

Structure

---       C    CU   A   ua 
   GUUGGUA GGCG  GUU AUC  u
   ||||||| ||||  ||| |||   
   CAGUCAU CCGC  CAA Uag  u
CGA       C    AU   A   uu 

Annotation confidence Not enough data

Genome context

ABKE03000076.1: 917762-917812 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8270

Mature ppc-miR-8270-5p

• Accession: MIMAT0033032
• Description: Pristionchus pacificus ppc-miR-8270-5p mature miRNA
• Sequence: 1 - GUUGGUACGGCGCUGUUAAUC - 21
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8270-3p

• Accession: MIMAT0033033
• Description: Pristionchus pacificus ppc-miR-8270-3p mature miRNA
• Sequence: 30 - UAAACUACGCCCUACUGACAGC - 51
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260