miRBase entry: ppc-mir-8364n

Stem-loop ppc-mir-8364n


Accession
MI0026951
Description
Pristionchus pacificus ppc-mir-8364n precursor miRNA


Sequence

UCUUCAUUCCACAUGCUUUCUCAgccaaucaagcagacgaGAUAGCGUAUGGAAUGAAGAGA
(((((((((((.(((((.((((.((.......))....)))).))))).)))))))))))..

Structure
--           C     U    ---A  ca 
  UCUUCAUUCCA AUGCU UCUC    gc  a
  ||||||||||| ||||| ||||    ||  u
  AGAAGUAAGGU UGCGA AGag    cg  c
AG           A     U    caga  aa 


Annotation confidence Not enough data
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Genome context
ABKE03000122.1: 632770-632831 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppc-mir-8364n
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8364n-5p

Accession MIMAT0033045
Description Pristionchus pacificus ppc-miR-8364n-5p mature miRNA
Sequence 1 - UCUUCAUUCCACAUGCUUUCUCA - 23
Evidence experimental
Illumina [1]

Mature ppc-miR-8364n-3p

Accession MIMAT0033046
Description Pristionchus pacificus ppc-miR-8364n-3p mature miRNA
Sequence 41 - GAUAGCGUAUGGAAUGAAGAGA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260