miRBase entry: ppc-mir-8275

Stem-loop ppc-mir-8275

Accession

MI0026953

Description

Pristionchus pacificus ppc-mir-8275 precursor miRNA

Sequence

GGCGACUUGUCCAGAAUCACACAggguucucaauccugUGCUUCUGGAUGGAGUCGUCAAA
((((((((.(((((((...(((((((((...))))))))).)))))))..))))))))...

Structure

---        -G       UCA         c 
   GGCGACUU  UCCAGAA   CACAggguu  
   ||||||||  |||||||   ||||||||| u
   CUGCUGAG  AGGUCUU   GUguccuaa  
AAA        GU       --C         c

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

ABKE03000092.1: 2613527-2613587 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8275

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8275-5p

Accession	MIMAT0033049
Description	Pristionchus pacificus ppc-miR-8275-5p mature miRNA
Sequence	1 - GGCGACUUGUCCAGAAUCACACA - 23
Evidence	experimental Illumina [1]

Mature ppc-miR-8275-3p

Accession	MIMAT0033050
Description	Pristionchus pacificus ppc-miR-8275-3p mature miRNA
Sequence	39 - UGCUUCUGGAUGGAGUCGUCAAA - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260