miRBase entry: ppc-mir-8279

Stem-loop ppc-mir-8279


Accession
MI0026957
Description
Pristionchus pacificus ppc-mir-8279 precursor miRNA


Sequence

AACCCGAUUUUCAUGGAUCUUUguguauuaugaaguccaAGAUUCAUGUCAAUCUGGUCUC
.(((.((((..((((((((((.(.............).))))))))))..)))).)))...

Structure
--A   C    UU          U uguau 
   ACC GAUU  CAUGGAUCUU g     u
   ||| ||||  |||||||||| |     a
   UGG CUAA  GUACUUAGAa c     u
CUC   U    CU          c ugaag 


Annotation confidence Not enough data
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Genome context
ABKE03000050.1: 1887639-1887699 [-]

Database links

Mature ppc-miR-8279-5p

Accession MIMAT0033057
Description Pristionchus pacificus ppc-miR-8279-5p mature miRNA
Sequence 1 - AACCCGAUUUUCAUGGAUCUUU - 22
Evidence experimental
Illumina [1]

Mature ppc-miR-8279-3p

Accession MIMAT0033058
Description Pristionchus pacificus ppc-miR-8279-3p mature miRNA
Sequence 40 - AGAUUCAUGUCAAUCUGGUCUC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260