miRBase entry: ppc-mir-8280

Stem-loop ppc-mir-8280


Accession
MI0026959
Description
Pristionchus pacificus ppc-mir-8280 precursor miRNA


Sequence

AACCCGAUCCAACUUGAUCGUUucugugcaauggcagcagcccaaCGAUCUAUUUCGAUCAGGUCCC
.(((.((((......(((((((.((((((....))).)))...)))))))......)))).)))...

Structure
--A   C    CAACUU       --u   -   a 
   ACC GAUC      GAUCGUU   cug ugc a
   ||| ||||      |||||||   ||| |||  
   UGG CUAG      CUAGCaa   gac acg u
CCC   A    CUUUAU       ccc   g   g 


Annotation confidence Not enough data
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Genome context
ABKE03000024.1: 401894-401960 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from ppc-mir-8280
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8280-5p

Accession MIMAT0033061
Description Pristionchus pacificus ppc-miR-8280-5p mature miRNA
Sequence 1 - AACCCGAUCCAACUUGAUCGUU - 22
Evidence experimental
Illumina [1]

Mature ppc-miR-8280-3p

Accession MIMAT0033062
Description Pristionchus pacificus ppc-miR-8280-3p mature miRNA
Sequence 46 - CGAUCUAUUUCGAUCAGGUCCC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260