miRBase entry: ppc-mir-2238l

Stem-loop ppc-mir-2238l


Accession
MI0026968
Description
Pristionchus pacificus ppc-mir-2238l precursor miRNA


Sequence

CCGUCCACUCUUCCUGUCAAUGguuugauuugaaugaccAAUGGCGGAUUAGUGGAUGUGA
.((((((((..(((.((((.(((((..........))))).)))))))..))))))))...

Structure
--C        CU   U    A     ugau 
   CGUCCACU  UCC GUCA UGguu    u
   ||||||||  ||| |||| |||||     
   GUAGGUGA  AGG CGGU Accag    u
AGU        UU   -    A     uaag 


Annotation confidence Not enough data
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Genome context
ABKE03000028.1: 1189264-1189324 [-]

Database links

Mature ppc-miR-2238l-5p

Accession MIMAT0033079
Description Pristionchus pacificus ppc-miR-2238l-5p mature miRNA
Sequence 1 - CCGUCCACUCUUCCUGUCAAUG - 22
Evidence experimental
Illumina [1]

Mature ppc-miR-2238l-3p

Accession MIMAT0033080
Description Pristionchus pacificus ppc-miR-2238l-3p mature miRNA
Sequence 40 - AAUGGCGGAUUAGUGGAUGUGA - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260