Stem-loop ppc-mir-8290

Accession

MI0026976

Description

Pristionchus pacificus ppc-mir-8290 precursor miRNA

Sequence

ACUGGUUUCUUGACACCUCACUUCacgaauuuggucggugaAGAGGUAGUUGAAGUAGCCAGCGA
.((((((.(((((((((((..(((((((......)).)))))))))).))).))).))))))...

Structure

--A      U   -   -     AC     -  au 
   CUGGUU CUU GAC ACCUC  UUCac ga  u
   |||||| ||| ||| |||||  ||||| ||   
   GACCGA GAA UUG UGGAG  Aagug cu  u
AGC      U   G   A     --     g  gg 

Annotation confidence Not enough data

Genome context

ABKE03000028.1: 1973582-1973646 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8290

Mature ppc-miR-8290-5p

• Accession: MIMAT0033093
• Description: Pristionchus pacificus ppc-miR-8290-5p mature miRNA
• Sequence: 1 - ACUGGUUUCUUGACACCUCACUUC - 24
• Evidence: experimental ; SOLiD [1]

Mature ppc-miR-8290-3p

• Accession: MIMAT0033094
• Description: Pristionchus pacificus ppc-miR-8290-3p mature miRNA
• Sequence: 42 - AGAGGUAGUUGAAGUAGCCAGCGA - 65
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260