miRBase entry: ppc-mir-8295

Stem-loop ppc-mir-8295

Accession

MI0026981

Description

Pristionchus pacificus ppc-mir-8295 precursor miRNA

Sequence

UUUCAUAUCUCGCCCAUAGGCCCucgacaacuuguaaucgaguACCUUUGGCGAUAUGUGGAGCG
((((((((.(((((...(((..(((((..........)))))..)))..))))).))))))))..

Structure

--        C     CAU   CC     caac 
  UUUCAUAU UCGCC   AGG  Cucga    u
  |||||||| |||||   |||  |||||     
  GAGGUGUA AGCGG   UCC  gagcu    u
GC        U     -UU   Au     aaug

Annotation confidence Not enough data

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Genome context

ABKE03000104.1: 248500-248564 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8295

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8295-5p

Accession	MIMAT0033103
Description	Pristionchus pacificus ppc-miR-8295-5p mature miRNA
Sequence	1 - UUUCAUAUCUCGCCCAUAGGCCC - 23
Evidence	experimental Illumina [1]

Mature ppc-miR-8295-3p

Accession	MIMAT0033104
Description	Pristionchus pacificus ppc-miR-8295-3p mature miRNA
Sequence	44 - ACCUUUGGCGAUAUGUGGAGCG - 65
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260