miRBase entry: ppc-mir-8303-2

Stem-loop ppc-mir-8303-2


Accession
MI0026995
Description
Pristionchus pacificus ppc-mir-8303-2 precursor miRNA
Gene family
MIPF0002121; mir-8303


Sequence

AAGCUGACGGGGUGUAAUGACAaucauaugacgaugUCAAUGCACCGCGUUGACUCCA
.((.(((((.((((((.(((((.((.......))))))).)))))).))))).))...

Structure
--A  C     G      A     a  au 
   AG UGACG GGUGUA UGACA uc  a
   || ||||| |||||| ||||| ||  u
   UC GUUGC CCACGU ACUgu ag  g
ACC  A     G      A     -  ca 


Annotation confidence Not enough data
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Genome context
ABKE03000094.1: 924526-924583 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppc-mir-8303-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8303-5p

Accession MIMAT0033127
Description Pristionchus pacificus ppc-miR-8303-5p mature miRNA
Sequence 1 - AAGCUGACGGGGUGUAAUGACA - 22
Evidence experimental
Illumina [1]

Mature ppc-miR-8303-2-3p

Accession MIMAT0033131
Description Pristionchus pacificus ppc-miR-8303-2-3p mature miRNA
Sequence 37 - UCAAUGCACCGCGUUGACUCCA - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260