Stem-loop ppc-mir-8305

Accession

MI0026997

Description

Pristionchus pacificus ppc-mir-8305 precursor miRNA

Sequence

CCGUAAACUCCGUUUCAACUACUGccgcaugguuccaGUAUUGAAAGGUUGUUCACGAGC
.(((.(((..(.((((((.(((((((....))...))))))))))).)..))).)))...

Structure

--C   A   UC G      C     ---  g 
   CGU AAC  C UUUCAA UACUG   cc c
   ||| |||  | |||||| |||||   ||  
   GCA UUG  G AAAGUU AUGac   gg a
CGA   C   UU G      -     cuu  u 

Annotation confidence Not enough data

Genome context

ABKE03000076.1: 2722969-2723028 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-8305

Mature ppc-miR-8305-5p

• Accession: MIMAT0033134
• Description: Pristionchus pacificus ppc-miR-8305-5p mature miRNA
• Sequence: 1 - CCGUAAACUCCGUUUCAACUACUG - 24
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8305-3p

• Accession: MIMAT0033135
• Description: Pristionchus pacificus ppc-miR-8305-3p mature miRNA
• Sequence: 38 - GUAUUGAAAGGUUGUUCACGAGC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260