miRBase entry: ppc-mir-8356b

Stem-loop ppc-mir-8356b


Accession
MI0027002
Description
Pristionchus pacificus ppc-mir-8356b precursor miRNA
Gene family
MIPF0001997; mir-8356


Sequence

AAUUUGAGAUUCGCGUGGUUGCAUuagaauaugaugaagaugCACCAUGGUGAUUCUUGAAUUCA
(((((((((.(((((((((.(((((.............)))))))))).)))).)))))))))..

Structure
--         U    -     U     agaau 
  AAUUUGAGA UCGC GUGGU GCAUu     a
  ||||||||| |||| ||||| |||||     u
  UUAAGUUCU AGUG UACCA Cguag     g
AC         U    G     -     aagua 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 236097-236161 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from ppc-mir-8356b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8356b-5p

Accession MIMAT0033144
Description Pristionchus pacificus ppc-miR-8356b-5p mature miRNA
Sequence 1 - AAUUUGAGAUUCGCGUGGUUGCAU - 24
Evidence experimental
Illumina [1]

Mature ppc-miR-8356b-3p

Accession MIMAT0033145
Description Pristionchus pacificus ppc-miR-8356b-3p mature miRNA
Sequence 43 - CACCAUGGUGAUUCUUGAAUUCA - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260