miRBase entry: ppc-mir-8309

Stem-loop ppc-mir-8309


Accession
MI0027004
Description
Pristionchus pacificus ppc-mir-8309 precursor miRNA


Sequence

UGGCAAUGCGUUCAGCUGCCAGCGucaaucucacagagaauaagcgcacaCUGGAGCUGAGCAGAGCCGGC
((((..(((..((((((.(((((((...((((...))))....))))....))))))))))))..))))..

Structure
--    AA   GU      G   ----    -caa    a 
  UGGC  UGC  UCAGCU CCA    GCGu    ucuc  
  ||||  |||  |||||| |||    ||||    |||| c
  GCCG  ACG  AGUCGA GGU    cgcg    agag  
CG    AG   --      -   Caca    aaua    a 


Annotation confidence Not enough data
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Genome context
ABKE03000092.1: 2484244-2484314 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppc-mir-8309
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8309-5p

Accession MIMAT0033148
Description Pristionchus pacificus ppc-miR-8309-5p mature miRNA
Sequence 1 - UGGCAAUGCGUUCAGCUGCCAGCG - 24
Evidence experimental
Illumina [1]

Mature ppc-miR-8309-3p

Accession MIMAT0033149
Description Pristionchus pacificus ppc-miR-8309-3p mature miRNA
Sequence 51 - CUGGAGCUGAGCAGAGCCGGC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260