miRBase entry: ppc-mir-8312

Stem-loop ppc-mir-8312


Accession
MI0027007
Description
Pristionchus pacificus ppc-mir-8312 precursor miRNA


Sequence

GAGUCGCGUUUCGCGAAUUUGauaucuggaaggggaauguguuucagcuagUCAUCCUUGCGUCGUUUAUCU
((...(((...(((((...((((..((((((.(......).))))))...))))...))))).)))...)).

Structure
-  GUC   UUU     AUU    -au      g gg 
 GA   GCG   CGCGA   UGau   cuggaa g  a
 ||   |||   |||||   ||||   |||||| |   
 CU   UGC   GCGUU   ACUg   gacuuu u  a
U  AUU   --U     CCU    auc      g gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ABKE03000063.1: 3369461-3369532 [-]

Database links

Mature ppc-miR-8312-5p

Accession MIMAT0033154
Description Pristionchus pacificus ppc-miR-8312-5p mature miRNA
Sequence 1 - GAGUCGCGUUUCGCGAAUUUG - 21
Evidence experimental
SOLiD [1]

Mature ppc-miR-8312-3p

Accession MIMAT0033155
Description Pristionchus pacificus ppc-miR-8312-3p mature miRNA
Sequence 52 - UCAUCCUUGCGUCGUUUAUCU - 72
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260