miRBase entry: ppc-mir-8338-1

Stem-loop ppc-mir-8338-1


Accession
MI0027013
Description
Pristionchus pacificus ppc-mir-8338-1 precursor miRNA
Gene family
MIPF0002060; mir-8338


Sequence

AUCUGCCACUACUAACCGUGucguacucacuacuacacgacACGGUUAGUAGUGGCAGAUGA
((((((((((((((((((((((((............))))))))))))))))))))))))..

Structure
--                        acuca 
  AUCUGCCACUACUAACCGUGucgu     c
  ||||||||||||||||||||||||      
  UAGACGGUGAUGAUUGGCAcagca     u
AG                        cauca 


Annotation confidence Not enough data
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Genome context
ABKE03000062.1: 2095739-2095800 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppc-mir-8338-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8338-5p

Accession MIMAT0033165
Description Pristionchus pacificus ppc-miR-8338-5p mature miRNA
Sequence 1 - AUCUGCCACUACUAACCGUG - 20
Evidence experimental
Illumina [1]

Mature ppc-miR-8338-3p

Accession MIMAT0033166
Description Pristionchus pacificus ppc-miR-8338-3p mature miRNA
Sequence 42 - ACGGUUAGUAGUGGCAGAUGA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260