miRBase entry: ppc-mir-8316

Stem-loop ppc-mir-8316


Accession
MI0027015
Description
Pristionchus pacificus ppc-mir-8316 precursor miRNA


Sequence

UGCGACGUCGGACAAUCCCUCgaauaaaucgauaaauaauccaccuaccguaugcucgAUGGUGUCCAGGUCGUCGC
.(((((((((((((..((.((((......((.................)).....)))).))))))).)).))))))

Structure
U      -  -     AU  C    auaaau  auaaaua 
 GCGACG UC GGACA  CC UCga      cg       a
 |||||| || |||||  || ||||      ||       u
 CGCUGC GG CCUGU  GG Agcu      gc       c
-      U  A     --  U    -cguau  cauccac 


Annotation confidence Not enough data
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Genome context
ABKE03000093.1: 5011100-5011176 [+]

Database links

Mature ppc-miR-8316-5p

Accession MIMAT0033169
Description Pristionchus pacificus ppc-miR-8316-5p mature miRNA
Sequence 1 - UGCGACGUCGGACAAUCCCUC - 21
Evidence experimental
Illumina [1]

Mature ppc-miR-8316-3p

Accession MIMAT0033170
Description Pristionchus pacificus ppc-miR-8316-3p mature miRNA
Sequence 59 - AUGGUGUCCAGGUCGUCGC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260