miRBase entry: ppc-mir-8315-2

Stem-loop ppc-mir-8315-2

Accession

MI0027016

Description

Pristionchus pacificus ppc-mir-8315-2 precursor miRNA

Gene family

MIPF0002039; mir-8315

Sequence

AGCCUCAGACAUUCUUGUAUGUCGcgaauugaagcgAUACCAGUCUGGAUGAGGCUGA
(((((((..((..((.((..(((((........))))))).))..))..)))))))..

Structure

--       GA  UU  U  AU     gaa 
  AGCCUCA  CA  CU GU  GUCGc   u
  |||||||  ||  || ||  |||||    
  UCGGAGU  GU  GA CA  UAgcg   u
AG       AG  CU  C  --     aag

Annotation confidence Not enough data

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Genome context

ABKE03000107.1: 3739478-3739535 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from ppc-mir-8315-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8315-3p

Accession	MIMAT0033168
Description	Pristionchus pacificus ppc-miR-8315-3p mature miRNA
Sequence	37 - AUACCAGUCUGGAUGAGGCUGA - 58
Evidence	experimental Illumina [1]

Mature ppc-miR-8315-2-5p

Accession	MIMAT0033171
Description	Pristionchus pacificus ppc-miR-8315-2-5p mature miRNA
Sequence	1 - AGCCUCAGACAUUCUUGUAUGUCG - 24
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260