miRBase entry: ppc-mir-8317b

Stem-loop ppc-mir-8317b


Accession
MI0027017
Description
Pristionchus pacificus ppc-mir-8317b precursor miRNA


Sequence

CAUGGGCUUUUCGAGGAUAUUCGCuauguugcaugcGAAUACCUCGCCUAGUCUAAGG
..((((((...(((((.(((((((.(((...)))))))))))))))...))))))...

Structure
-CA      UUU     A       u   u 
   UGGGCU   CGAGG UAUUCGC aug  
   ||||||   ||||| ||||||| ||| u
   AUCUGA   GCUCC AUAAGcg uac  
GGA      UCC     -       -   g 


Annotation confidence Not enough data
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Genome context
ABKE03000013.1: 161356-161413 [-]

Database links

Mature ppc-miR-8317b-5p

Accession MIMAT0033172
Description Pristionchus pacificus ppc-miR-8317b-5p mature miRNA
Sequence 1 - CAUGGGCUUUUCGAGGAUAUUCGC - 24
Evidence experimental
Illumina [1]

Mature ppc-miR-8317b-3p

Accession MIMAT0033173
Description Pristionchus pacificus ppc-miR-8317b-3p mature miRNA
Sequence 37 - GAAUACCUCGCCUAGUCUAAGG - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260