miRBase entry: ppc-mir-8331

Stem-loop ppc-mir-8331


Accession
MI0027034
Description
Pristionchus pacificus ppc-mir-8331 precursor miRNA


Sequence

UGCGCCACGAUAGGCGAGAUCAGAuuauuugaguuucugAUCUCCCGUUCGUGUCGAUGC
..((.(((((..((.(((((((((...........)))))))))))..))))).))....

Structure
--UG  C     UA  C         uuau 
    CG CACGA  GG GAGAUCAGA    u
    || |||||  || |||||||||    u
    GC GUGCU  CC CUCUAgucu    g
CGUA  U     UG  -         uuga 


Annotation confidence Not enough data
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Genome context
ABKE03000020.1: 742022-742081 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppc-mir-8331
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8331-5p

Accession MIMAT0033206
Description Pristionchus pacificus ppc-miR-8331-5p mature miRNA
Sequence 1 - UGCGCCACGAUAGGCGAGAUCAGA - 24
Evidence experimental
SOLiD [1]

Mature ppc-miR-8331-3p

Accession MIMAT0033207
Description Pristionchus pacificus ppc-miR-8331-3p mature miRNA
Sequence 40 - AUCUCCCGUUCGUGUCGAUGC - 60
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260