miRBase entry: ppc-mir-8334

Stem-loop ppc-mir-8334


Accession
MI0027037
Description
Pristionchus pacificus ppc-mir-8334 precursor miRNA


Sequence

AGUGCAAUAAUCUCAGGUCGCAcugaauugaaaugcagCGACGAGAGACUGUCGCACUCU
(((((.(((.((((..(((((................)))))..)))).))).)))))..

Structure
--     A   A    AG     Acugaau 
  AGUGC AUA UCUC  GUCGC       u
  ||||| ||| ||||  |||||        
  UCACG UGU AGAG  CAGCg       g
UC     C   C    AG     acguaaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ABKE03000131.1: 505062-505121 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ppc-mir-8334
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8334-5p

Accession MIMAT0033212
Description Pristionchus pacificus ppc-miR-8334-5p mature miRNA
Sequence 1 - AGUGCAAUAAUCUCAGGUCGCA - 22
Evidence experimental
Illumina [1]

Mature ppc-miR-8334-3p

Accession MIMAT0033213
Description Pristionchus pacificus ppc-miR-8334-3p mature miRNA
Sequence 39 - CGACGAGAGACUGUCGCACUCU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260