miRBase entry: ppc-mir-8335

Stem-loop ppc-mir-8335


Accession
MI0027038
Description
Pristionchus pacificus ppc-mir-8335 precursor miRNA


Sequence

GGACAUCAAGACGCCUCAGGCACAUUuaucauGUUGUUGUUGUUGUUUUGCCUCUAG
(((...((((((((..(((..((((.....))))..)))..).)))))))..)))..

Structure
--   CAU       - CU   GC    U 
  GGA   CAAGACG C  CAG  ACAU u
  |||   ||||||| |  |||  |||| a
  UCU   GUUUUGU G  GUU  UGua u
GA   -CC       U UU   GU    c 


Annotation confidence Not enough data
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Genome context
ABKE03000060.1: 7660153-7660209 [+]

Database links

Mature ppc-miR-8335-5p

Accession MIMAT0033214
Description Pristionchus pacificus ppc-miR-8335-5p mature miRNA
Sequence 1 - GGACAUCAAGACGCCUCAGGCACAUU - 26
Evidence experimental
Illumina [1]

Mature ppc-miR-8335-3p

Accession MIMAT0033215
Description Pristionchus pacificus ppc-miR-8335-3p mature miRNA
Sequence 33 - GUUGUUGUUGUUGUUUUGCCUCUAG - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260