miRBase entry: ppc-mir-8339

Stem-loop ppc-mir-8339

Accession

MI0027043

Description

Pristionchus pacificus ppc-mir-8339 precursor miRNA

Sequence

AGUACAACAGCUUCUUGUCACAcagaaaugaacugcugUGACUAGAUCCUGUUGUAUUAU
((((((((((..(((.(((((((((.......))).)))))).)))..))))))))))..

Structure

--          CU   U      -   aa 
  AGUACAACAG  UCU GUCACA cag  a
  ||||||||||  ||| |||||| |||  u
  UUAUGUUGUC  AGA CAGUgu guc  g
UA          CU   U      c   aa

Annotation confidence Not enough data

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Genome context

ABKE03000131.1: 504444-504503 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-8339

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8339-5p

Accession	MIMAT0033223
Description	Pristionchus pacificus ppc-miR-8339-5p mature miRNA
Sequence	1 - AGUACAACAGCUUCUUGUCACA - 22
Evidence	experimental Illumina [1]

Mature ppc-miR-8339-3p

Accession	MIMAT0033224
Description	Pristionchus pacificus ppc-miR-8339-3p mature miRNA
Sequence	39 - UGACUAGAUCCUGUUGUAUUAU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260