miRBase entry: ppc-mir-8286b

Stem-loop ppc-mir-8286b


Accession
MI0027052
Description
Pristionchus pacificus ppc-mir-8286b precursor miRNA
Gene family
MIPF0001964; mir-8286


Sequence

ACCGCACCUUGCUCUAUCCAUCucgaauugagugaguUGGCAAGAACUUUGGCACG
.(((...((((((..((.((.(((.....))))).)).)))))).....)))....

Structure
---A   --CAC      CU  C  U   g 
    CCG     CUUGCU  AU CA Cuc a
    |||     ||||||  || || ||| a
    GGU     GAACGG  ug gu gag u
GCAC   UUCAA      -U  a  -   u 


Annotation confidence Not enough data
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Genome context
ABKE03000123.1: 4491103-4491158 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from ppc-mir-8286b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8286b-5p

Accession MIMAT0033240
Description Pristionchus pacificus ppc-miR-8286b-5p mature miRNA
Sequence 1 - ACCGCACCUUGCUCUAUCCAUC - 22
Evidence experimental
SOLiD [1]

Mature ppc-miR-8286b-3p

Accession MIMAT0033241
Description Pristionchus pacificus ppc-miR-8286b-3p mature miRNA
Sequence 38 - UGGCAAGAACUUUGGCACG - 56
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260