miRBase entry: ppc-mir-8351

Stem-loop ppc-mir-8351


Accession
MI0027059
Description
Pristionchus pacificus ppc-mir-8351 precursor miRNA


Sequence

UACUCGGCUCUGCCAGUCUUUCAuguugccuuuuuguccuuugUGAGACGACAGUGCCGAGAGGC
..((((((.(((...(((((.((....((......))....)).)))))..))).))))))....

Structure
--UA      U   CCA     U  uguu  cu 
    CUCGGC CUG   GUCUU CA    gc  u
    |||||| |||   ||||| ||    ||   
    GAGCCG GAC   CAGAG gu    ug  u
CGGA      U   -AG     U  uucc  uu 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 225677-225741 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from ppc-mir-8351
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8351-5p

Accession MIMAT0033254
Description Pristionchus pacificus ppc-miR-8351-5p mature miRNA
Sequence 1 - UACUCGGCUCUGCCAGUCUUUCA - 23
Evidence experimental
Illumina [1]

Mature ppc-miR-8351-3p

Accession MIMAT0033255
Description Pristionchus pacificus ppc-miR-8351-3p mature miRNA
Sequence 44 - UGAGACGACAGUGCCGAGAGGC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260