miRBase entry: ppc-mir-8353

Stem-loop ppc-mir-8353


Accession
MI0027065
Description
Pristionchus pacificus ppc-mir-8353 precursor miRNA


Sequence

AUACAAGUCAGAUUCCUUUUCGCaguagaugaaguugcGAAAUGAGUCUGACUUGUAUGA
(((((((((((((((..((((((((.........)))))))).)))))))))))))))..

Structure
--               CU        uag 
  AUACAAGUCAGAUUC  UUUCGCag   a
  |||||||||||||||  ||||||||   u
  UAUGUUCAGUCUGAG  AAAGcguu   g
AG               -U        gaa 


Annotation confidence Not enough data
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Genome context
ABKE03000131.1: 502556-502615 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ppc-mir-8353
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8353-5p

Accession MIMAT0033266
Description Pristionchus pacificus ppc-miR-8353-5p mature miRNA
Sequence 1 - AUACAAGUCAGAUUCCUUUUCGC - 23
Evidence experimental
Illumina [1]

Mature ppc-miR-8353-3p

Accession MIMAT0033267
Description Pristionchus pacificus ppc-miR-8353-3p mature miRNA
Sequence 39 - GAAAUGAGUCUGACUUGUAUGA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260