miRBase entry: ppc-mir-8355

Stem-loop ppc-mir-8355


Accession
MI0027068
Description
Pristionchus pacificus ppc-mir-8355 precursor miRNA


Sequence

ACUUGCGCCGUUGAACGCUGCUcacuggucuugauUAGCGUAAACGGGUCAAGUGC
(((((..(((((..((((((.(((.......))).)))))).)))))..)))))..

Structure
--     CG     GA      C   cu 
  ACUUG  CCGUU  ACGCUG Uca  g
  |||||  |||||  |||||| |||  g
  UGAAC  GGCAA  UGCGAU agu  u
CG     UG     -A      u   uc 


Annotation confidence Not enough data
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Genome context
ABKE03000028.1: 1908093-1908148 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ppc-mir-8355
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8355-5p

Accession MIMAT0033272
Description Pristionchus pacificus ppc-miR-8355-5p mature miRNA
Sequence 1 - ACUUGCGCCGUUGAACGCUGCU - 22
Evidence experimental
Illumina [1]

Mature ppc-miR-8355-3p

Accession MIMAT0033273
Description Pristionchus pacificus ppc-miR-8355-3p mature miRNA
Sequence 36 - UAGCGUAAACGGGUCAAGUGC - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260