miRBase entry: ppc-mir-8358

Stem-loop ppc-mir-8358


Accession
MI0027071
Description
Pristionchus pacificus ppc-mir-8358 precursor miRNA


Sequence

UCUUUCAGAUUUUUCACCCGACAuggcauuuuugaauuuacaugUUUGGCCGAAUUUCUGGAAGUCA
.((((((((..(((..((.((((((...............)))))).))..)))..))))))))...

Structure
--U        UU   CA  C      gcauuu 
   CUUUCAGA  UUU  CC GACAug      u
   ||||||||  |||  || ||||||      u
   GAAGGUCU  AAG  GG UUguac      g
ACU        UU   CC  U      auuuaa 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 227347-227413 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from ppc-mir-8358
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8358-5p

Accession MIMAT0033278
Description Pristionchus pacificus ppc-miR-8358-5p mature miRNA
Sequence 1 - UCUUUCAGAUUUUUCACCCGACA - 23
Evidence experimental
Illumina [1]

Mature ppc-miR-8358-3p

Accession MIMAT0033279
Description Pristionchus pacificus ppc-miR-8358-3p mature miRNA
Sequence 45 - UUUGGCCGAAUUUCUGGAAGUCA - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260