miRBase entry: str-mir-7880b-2

Stem-loop str-mir-7880b-2


Accession
MI0027086
Description
Strongyloides ratti str-mir-7880b-2 precursor miRNA
Gene family
MIPF0002015; mir-7880


Sequence

UGGUUGGAUCGAUCUGCAAACAugauauguaaucguuUUUGCGACCGAAUCCAGGCCACG
(((((((((((.((.(((((.(((((.....))))).))))))).)).))))).))))..

Structure
--    -     -  A  U     C     a 
  UGGU UGGAU CG UC GCAAA Augau u
  |||| ||||| || || ||||| ||||| g
  ACCG ACCUA GC AG CGUUU ugcua u
GC    G     A  C  -     u     a 


Annotation confidence Not enough data
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Genome context
Sratti_scf00001_ChrX: 2081229-2081288 [-]
Clustered miRNAs
10 other miRNAs are < 10 kb from str-mir-7880b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature str-miR-7880b-3p

Accession MIMAT0033305
Description Strongyloides ratti str-miR-7880b-3p mature miRNA
Sequence 38 - UUUGCGACCGAAUCCAGGCCACG - 60
Evidence experimental
Illumina [1]

Mature str-miR-7880b-2-5p

Accession MIMAT0033308
Description Strongyloides ratti str-miR-7880b-2-5p mature miRNA
Sequence 1 - UGGUUGGAUCGAUCUGCAAACA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260